Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks 英文参考文献.docVIP

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Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks 英文参考文献.doc

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Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks 英文参考文献

Open Access Re rch 2008Abi-HaidaretVoal.lumesea9, Suppl 2, Article S11 Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks Alaa Abi-Haidar1,2, Jasleen Kaur1, Ana Maguitman3, Predrag Radivojac1, Andreas Rechtsteiner4, Karin Verspoor5, Zhiping Wang6 and Luis M Rocha1,2 Addresses: 1School of Informatics, Indiana University, 107 S. Indiana Ave. Bloomington, IN 47405, USA. 2FLAD (Funda??o Luso-Americana para o Desenvolvimento) Computational Biology Collaboratorium, Instituto Gulbenkian de Ciência, Rua da Quinta Grande, 6 P-2780-156 Oeiras, Portugal. 3Departamento de Ciencias e Ingenería de la Computación, Universidad Nacional del Sur, Avenida Alem 1253, Bahía Blanca, Buenos Aires, Argentina. 4Center for Genomics and Bioinformatics, Indiana University, 107 S. Indiana Ave. Bloomington, IN 47405, USA. 5Modeling, Algorithms and Informatics Group, Los Alamos National Laboratory, 1350 Central, MS C330 Los Alamos, NM 87545, USA. 6Biostatistics, School of Medicine, Indiana University, 107 S. Indiana Ave. Bloomington, IN 47405, USA. Correspondence: Luis M Rocha. Email: rocha@ Published: 01 September 2008 doi: 10.1186/gb-2008-9-S2-S11 Genome Biology 2008, 9(Suppl 2):S11 The electronic version of this article is the complete one and can be found online at /2008/9/S2/S11 ? 2008 Abi-Haidar et al; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: We participated in three of the protein-protein interaction subtasks of the Second BioCreative Challenge: classification of abstracts relevant for protein-protein interaction (interaction article subtask [IAS]), discovery of protein pairs (interaction pair subtask [IPS]), and identification of text passages characterizing prote