生物信息学资源库介绍resourse_introduce.ppt

生物信息学相关数据库资源介绍 生物信息学相关数据库资源 核酸及其相关数据库（序列数据库、基因组相关数据库、核酸三维结构数据库、其他） 蛋白质相关数据库（序列数据库、蛋白质三维结构数据库、蛋白质组数据库（二维凝胶电泳数据库）、信号传导及蛋白质-蛋白质相互作用相关数据库、DNA和蛋白质相互作用数据库） 基因或蛋白质一些特定数据库 糖类及其相关数据库 蛋白质翻译后修饰相关数据库 基因表达数据库 人类基因突变及疾病相关数据库 进化相关数据库及资源专利数据库 资源目录服务器或网页 核酸及其相关数据库 核酸序列数据库 BIOSINO 我国的核酸序列公共数据库 EMBL - EMBL Nucleotide sequence database (EBI) * GenBank - GenBank Nucleotide Sequence database (NCBI) * DDBJ - DNA Data Bank of Japan * dbEST - Database of Expressed Sequence Tags? (NCBI) dbSTS - Database of Sequence Tagged Sites (NCBI) 2.基因组及相关数据库? Genomic Databases GenomeWeb(HGMP) - A catalogue of useful Web sites for Genomics with a set of collections of genome databases? GSDB - Genome Sequence database (NCGR) GOLD - Genomes On-line db 一些数据库的直接链接 3.核酸三维结构数据库 NDB - Nucleic Acid Databank (3D structures) BNASDB - Nucleic acid structure db from University of Pune 4.其他 AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db Codon Usage Db? - The frequency of codon use in each organism is made searchable through this World Wide Web site. EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db 其它 PlantCARE - Plant cis-acting regulatory DNA elements db sRNA db - Small RNA db ssu rRNA - Small ribosomal subunit db lsu rRNA - Large ribosomal subunit db 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth uRNADB - uRNA db 其他 RNA editing - RNA editing site RNAmod db - RNA modification db TelDB - Multimedia Telomere Resource TRADAT - TRAnscription Databases and Analysis Tools Subviral RNA db - Small circular RNAs db (viroid and viroid-like) Transgenics Cre Transgenic Database - Cre transgenic mouse lines Transgenic/Targeted Mutation Database - Information on transgenic anima