Mrbayes 3.2 编译并行.pdfVIP

How to download and compile the most recent version of MrBayes 3.2 (Mac and Unix) from the MrBayes svn repository on SourceForge 1. If a Mac, open Terminal (located in Applications/Utilities). Then check that you have gcc installed by typing $ which gcc This should result in the directory location of your current copy of gcc, if you have one installed. If not, install one from the Developer Tools CD that came with your computer. Most Unix systems will already have gcc installed. 2. Type (on one line): svn co /svnroot/mrbayes/trunk/src mrbayes You should now get a number of files downloaded to your directory, in a folder named ”mrbayes”. 3. Change to the mrbayes directory by typing: $ cd mrbayes 4. Create the Makefile, which contains the instructions for the compiler (the ”make” command), by typing: $ ./configure 5. Now compile the program by typing: $ make It will take a few minutes for the compiler to assemble the binary version of the program. 6. Run the program by typing: $ ./mb You may want to put the executable in your path. Consult a Unix savvy person on how to do this. Compiling and running the MPI version of MrBayes 1. Download the source code and shift to the ”mrbayes” directory as described above. 2. In step 4, use the following command to create the Makefile instead: $ ./configure --enable-mpi=yes 3. Now compile the program by typing $ make It will take a few minutes for the compiler to assemble the binary version of the program. If the first entry on each line printed during the compilation step is ”mpicc”, you are compiling the parallel version. If it is ”gcc”, something went wrong during the configure step and you are compiling the serial version instead. If you have already compiled the serial version of the program in the same directory, you first need to remove the compiled obj ects by running $ make clean Then you run the ”make” command as above. Note that the compiled program is going to be called ”mb” both