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ORIGINAL RESEARCH ARTICLE
NEURAL CIRCUITS published: 10 July 2014
doi: 10.3389/fncir.2014.00076
Anatomical characterization of Cre driver mice for neural
circuit mapping and manipulation
Julie A. Harris , Karla E. Hirokawa , Staci A. Sorensen , Hong Gu , Maya Mills , Lydia L. Ng ,
*
Phillip Bohn , Marty Mortrud , Benjamin Ouellette , Jolene Kidney , Kimberly A. Smith , Chinh Dang ,
Susan Sunkin , Amy Bernard , Seung Wook Oh , Linda Madisen and Hongkui Zeng
Allen Institute for Brain Science, Seattle, WA, USA
Edited by: Significant advances in circuit-level analyses of the brain require tools that allow for
Benjamin R. Arenkiel, Baylor College labeling, modulation of gene expression, and monitoring and manipulation of cellular
of Medicine, USA
activity in specific cell types and/or anatomical regions. Large-scale projects and individual
Reviewed by: laboratories have produced hundreds of gene-specific promoter-driven Cre mouse lines
Josh Huang, Cold Spring Harbor
Laboratory, USA invaluable for enabling genetic access to subpopulations of cells in the brain. However,
Petr Tvrdik, University of Utah, USA the potential utility of each line may not be fully realized without systematic whole
*Correspondence: brain characterization of transgene expression patterns. We established a high-throughput
Julie A. Harris, Allen Institute for in situ hybridization (ISH), imaging and data processing pipeline to describe whole brain
Brain Science, 551 N 34th St., ge
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