genomic tools for evolution and conservation in the chimpanzee pan troglodytes ellioti is a genetically distinct population基因组的进化和保护工具黑猩猩黑猩猩ellioti遗传学上截然不同的人口.pdfVIP
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genomic tools for evolution and conservation in the chimpanzee pan troglodytes ellioti is a genetically distinct population基因组的进化和保护工具黑猩猩黑猩猩ellioti遗传学上截然不同的人口
Genomic Tools for Evolution and Conservation in the
Chimpanzee: Pan troglodytes ellioti Is a Genetically
Distinct Population
1,2. 3. 1,2,4 2 5
Rory Bowden , Tammie S. MacFie , Simon Myers , Garrett Hellenthal , Eric Nerrienet , Ronald E.
Bontrop6, Colin Freeman1,2, Peter Donnelly1,2*, Nicholas I. Mundy3
1 Department of Statistics, University of Oxford, Oxford, United Kingdom, 2 Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom,
3 Department of Zoology, University of Cambridge, Cambridge, United Kingdom, 4 Broad Institute, Boston, Massachusetts, United States of America, 5 Centre Pasteur du
´
Cameroun, Yaounde, Cameroon, 6 Biomedical Primate Research Center, Rijswijk, The Netherlands
Abstract
In spite of its evolutionary significance and conservation importance, the population structure of the common chimpanzee,
Pan troglodytes, is still poorly understood. An issue of particular controversy is whether the proposed fourth subspecies of
chimpanzee, Pan troglodytes ellioti, from parts of Nigeria and Cameroon, is genetically distinct. Although modern high-
throughput SNP genotyping has had a major impact on our understanding of human population structure and
demographic history, its application to ecological, demographic, or conservation questions in non-human species has been
extremely limited. Here we apply these tools to chimpanzee population structure, using ,700 autosomal SNPs derived from
chimpanzee genomic data and a further ,100 SNPs from targeted re-sequencing. We demonstrate conclusively the
existence of P. t. ellioti as a genetically distinct subgroup. We show that there is cl
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