seas a system for seed-based pathway enrichment analysis海洋系统seed-based通路富集分析.pdfVIP

下载本文档

2
0
约4.73万字
约 6页
2017-10-13 发布于上海
举报
版权申诉

seas a system for seed-based pathway enrichment analysis海洋系统seed-based通路富集分析.pdf

1、原创力文档（book118）网站文档一经付费（服务费），不意味着购买了该文档的版权，仅供个人/单位学习、研究之用，不得用于商业用途，未经授权，严禁复制、发行、汇编、翻译或者网络传播等，侵权必究。。
2、本站所有内容均由合作方或网友上传，本站不对文档的完整性、权威性及其观点立场正确性做任何保证或承诺！文档内容仅供研究参考，付费前请自行鉴别。如您付费，意味着您自己接受本站规则且自行承担风险，本站不退款、不进行额外附加服务；查看《如何避免下载的几个坑》。如果您已付费下载过本站文档，您可以点击这里二次下载。
3、如文档侵犯商业秘密、侵犯著作权、侵犯人身权等，请点击“版权申诉”（推荐），也可以打举报电话：400-050-0827(电话支持时间：9:00-18:30)。
4、该文档为VIP文档，如果想要下载，成为VIP会员后，下载免费。
5、成为VIP后，下载本文档将扣除1次下载权益。下载后，不支持退款、换文档。如有疑问请联系我们。
6、成为VIP后，您将拥有八大权益，权益包括：VIP文档下载权益、阅读免打扰、文档格式转换、高级专利检索、专属身份标志、高级客服、多端互通、版权登记。
7、VIP文档为合作方或网友上传，每下载1次，网站将根据用户上传文档的质量评分、类型等，对文档贡献者给予高额补贴、流量扶持。如果你也想贡献VIP文档。上传文档

seas a system for seed-based pathway enrichment analysis海洋系统seed-based通路富集分析

SEAS: A System for SEED-Based Pathway Enrichment Analysis Xizeng Mao1., Yu Zhang3,4., Ying Xu1,2,3* 1 Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America, 2 BioEnergy Science Center BESC, University of Georgia, Athens, Georgia, United States of America, 3 College of Computer Science and Technology, Jilin University, Changchun, China, 4 Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education, Jilin University, Changchun, China Abstract Pathway enrichment analysis represents a key technique for analyzing high-throughput omic data, and it can help to link individual genes or proteins found to be differentially expressed under specific conditions to well-understood biological pathways. We present here a computational tool, SEAS, for pathway enrichment analysis over a given set of genes in a specified organism against the pathways (or subsystems) in the SEED database, a popular pathway database for bacteria. SEAS maps a given set of genes of a bacterium to pathway genes covered by SEED through gene ID and/or orthology mapping, and then calculates the statistical significance of the enrichment of each relevant SEED pathway by the mapped genes. Our evaluation of SEAS indicates that the program provides highly reliable pathway mapping results and identifies more organism-specific pathways than similar existing programs. SEAS is publicly released under the GPL license agreement and freely available at /,xizeng/research/seas/. Citation: Mao X, Zhang Y, Xu Y (2011) SEAS: A System for SEED-Based Pathway Enrichment Analysis. PLoS ONE 6(7): e22556. doi:10.1371/journal.pone.0022556 Editor: Vladimir Brusic, Dana-Farber Cancer Institute, United States of America Received March 18, 2011; Accepte