analytical variables influencing the performance of a mirna based laboratory assay for prediction of relapse in stage i non-small cell lung cancer (nsclc)分析变量影响microrna的实验室试验为基础的性能预测复发的i期非小细胞肺癌(nsclc).pdfVIP
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Dahlgaard et al. BMC Research Notes 2011, 4:424
/1756-0500/4/424
RESEARCH ARTICLE Open Access
Analytical variables influencing the performance
of a miRNA based laboratory assay for prediction
of relapse in stage I non-small cell lung cancer
(NSCLC)
1,5* 1 1 3,4 6 1 2
Jesper Dahlgaard , Wiktor Mazin , Thomas Jensen , Mette Pøhl , Wiam Bshara , Anker Hansen , Eric Kanisto ,
5 3 5 3,4 2
Stephen Jacques Hamilton-Dutoit , Olfred Hansen , Henrik Hager , Henrik J Ditzel , Sai Yendamuri and
Steen Knudsen1
Abstract
Background: Laboratory assays are needed for early stage non-small lung cancer (NSCLC) that can link molecular
and clinical heterogeneity to predict relapse after surgical resection. We technically validated two miRNA assays for
prediction of relapse in NSCLC. Total RNA from seventy-five formalin-fixed and paraffin-embedded (FFPE)
specimens was extracted, labeled and hybridized to Affymetrix miRNA arrays using different RNA input amounts,
ATP-mix dilutions, array lots and RNA extraction- and labeling methods in a total of 166 hybridizations. Two
combinations of RNA extraction- and labeling methods (assays I and II) were applied to a cohort of 68 early stage
NSCLC patients.
Results: RNA input amount and RNA extraction- and labeling methods affected signal intensity and the number of
detected probes and probe sets, and caused large variation, whereas different ATP-mix dilutions and array lots did
not. Leave-one-out accuracies for prediction of relapse were 63% and 73% for the two assays. Prognosticator calls
(no recurrence” or “recurrence”) were co
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