the salt-responsive transcriptome of chickpea roots and nodules via deepsupersage的转录组salt-responsive鹰嘴豆根和通过deepsupersage结节.pdfVIP

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the salt-responsive transcriptome of chickpea roots and nodules via deepsupersage的转录组salt-responsive鹰嘴豆根和通过deepsupersage结节.pdf

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the salt-responsive transcriptome of chickpea roots and nodules via deepsupersage的转录组salt-responsive鹰嘴豆根和通过deepsupersage结节

Molina et al. BMC Plant Biology 2011, 11:31 /1471-2229/11/31 RESEARCH ARTICLE Open Access The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE 1,6* 3 1,4 5 1 2 Carlos Molina , Mainassara Zaman-Allah , Faheema Khan , Nadia Fatnassi , Ralf Horres , Björn Rotter , 2 3 3 2 1 Diana Steinhauer , Laurie Amenc , Jean-Jacques Drevon , Peter Winter , Günter Kahl Abstract Background: The combination of high-throughput transcript profiling and next-generation sequencing technologies is a prerequisite for genome-wide comprehensive transcriptome analysis. Our recent innovation of deepSuperSAGE is based on an advanced SuperSAGE protocol and its combination with massively parallel pyrosequencing on Roche’s 454 sequencing platform. As a demonstration of the power of this combination, we have chosen the salt stress transcriptomes of roots and nodules of the third most important legume crop chickpea (Cicer arietinum L.). While our report is more technology-oriented, it nevertheless addresses a major world-wide problem for crops generally: high salinity. Together with low temperatures and water stress, high salinity is responsible for crop losses of millions of tons of various legume (and other) crops. Continuously deteriorating environmental conditions will combine with salinity stress to further compromise crop yields. As a good example for such stress-exposed crop plants, we started to characterize salt stress responses of chickpeas on the transcriptome level. Results: We used deepSuperSAGE to detect early global transcriptome changes in salt-stressed chickpea. The salt