核算化学 生物学软件.ppt

Sequence Analysis Software Vector NTI Suite Omiga 2.0 DNA Star Vector NTI Suite Introduction Vector NTI Advance, a suite of desktop applications, is a comprehensive set of sequence analysis software tools specifically designed for the molecular biologist to study, visualize,manipulate, construct and store biological molecules. Vector NTI Advance? 11.5 October 15th, 2010 Vector NTI Advance? 11.0 December 15th, 2008 The Power of Vector NTI Advance 1.Local Database DNA/RNA and protein molecules, restriction enzymes, oligonucleotides (including PCR primers, sequencing primers and hybridization probes), gel markers, BLAST search results, and citations. 2 Vector NTI Sequence analysis, annotation, and illustration;restriction mapping; recombinant molecule design, in silico gel electrophoresis; synthetic biology workflows support and data management 3 AlignX AlignX is a multiple sequence alignment tool. In AlignX, you can: Perform multiple sequence alignments on either proteins or nucleic acids without reformatting between applications and computer platforms. In the alignment, link, localize, and compare important domains in individual sequences Generate plots of similarity and sequence complexity AlignX features include multicolor presentation, alignment editing, sequence comparison dotplots, guide trees, sequence and structure alignments, and similarity distribution plots. AlignX reads all standard text formats such as FASTA, GenBank, EMBL, SWISS-PROT, GenPept, andASCII text. AlignX Display window 4.ContigExpress ContigExpress is a program for assembling DNA fragments into longer contiguous sequences commonly called “contigs.” 5.BioAnnotator Protein motif mapping and annotation hydrophobicity hydrophilicity scales secondary structure Physiochemical analyses of DNA sequences Melting Temperature (Thermodynamic) Melting Temperature (GC Content) GC Content (%) Nucleic Acid Distribution (%) Sequence Complexity