大规模基因数据处理.PPTVIP

Performance: Supercomputer: Dawning 5000 (40 16-core servers with 32GB memory) Data： 50x coverage of Yeast: containing 17 million reads, 255M nodes 50x coverage of C. elegans: containing 141 million reads, 2G nodes Error rate 1%, and the length of reads from 36bp to 50bp. Performance Analysis Performance Analysis Time usage analysis in three phase on C.elegans dataset the speedup in edge merging is about 35 and the overall runtime was reduced by a factor of 20. Performance: Time usage analysis in three phase on Yeast dataset the speedup in edge merging is about 50 and the overall runt