基于编码序列、基因间序列和氨基酸序列构建的系统发生关系比较-物理学专业论文.docxVIP

内蒙古火学硕上学位论文l·________-_-___·-_I_-__·。I。_。__·_______·-____···-__-I-_·。____--__________I____--__-__·-_·_-__--_____。·___--···__-·_·_-___·______I_--_-_。。。。。_·_。。。。。。。o。‘。。。’’o。。。。。o。o’oo‘。。。o。。。’’一 内蒙古火学硕上学位论文 l·________-_-___·-_I_-__·。I。_。__·_______·-____···-__-I-_·。____--__________I____--__-__·-_·_-__--_____。·___--···__-·_·_-___·______I_--_-_。。。。。_·_。。。。。。。o。‘。。。’’o。。。。。o。o’oo‘。。。o。。。’’一 CoMPARISON OF PHYLoGENETIC RELATIoNSHlPS CoNSTRUCTED BY USING PRoTEIN-CoDING，INTERGENIC SEQUENCES AND AMINO ACID SEQUENCES ABSTRACT Codon level evolution is still one of the hot issues of today，SO depth study of genome codon usage pattems and the formation of the various factors this model it will help understand the molecular evolution of genomic features and historical events．Obviously，two adjacent codons，or close to the triad，that is to say the information of base pair of codon pairs or triplet pairs should also be able to reflect the evolution of biological information． As dinucleotide frequencies of codon pairs and triplet pairs an indicator to explore protein coding sequences and intergenic sequences and amino acid sequence among the evolution in the biological differences，the specific findings fire as follows： 内蒙古人学硕士学位论文respectively 内蒙古人学硕士学位论文 respectively for protein coding sequences and intergenic sequences．Archaea or eukaryotes were clustered one independent branch by the two kinds of sequences．It shows that the selected parameters are suitable．Compared with the phylogenetic relationship which was constructed by amino acid sequences，it was found that the evolutions of protein coding，intergenic and amino acid sequences have distinct differences for most firmicutes．We propose that the evolution information of the three kinds of sequences should be combined together SO that a more natural phylogenetic relationship can be obtained． KEYWORDS：phylogenetic relationship，dinucleotide frequency，long rang base correlation，coding sequence， intergenic sequence III 内蒙古人学顾士学位论文目录 内蒙古人学顾士