植物分子生物学网站GRAMENE.ppt

A Comparative Genomic Mapping Resource for Grains ;Gramene is a curated, open-source, Web-accessible data resource for comparative genome analysis in the grasses. As an information resource, Gramenes purpose is to provide added value to data sets available within the public sector to facilitate researchers ability to leverage the rice genomic sequence to identify and understand corresponding genes, pathways and phenotypes in the crop grasses. This is achieved by building automated and curated relationships between rice and other cereals for both sequence and biology. Extensive work over the past two decades has shown remarkably consistent conservation of gene order within large segments of linkage groups in rice, maize, sorghum, barley, wheat, rye, sugarcane and other agriculturally important grasses. A substantial body of data supports the notion that the rice genome is significantly colinear at both large and short scales with other crop grasses, opening the possibility of using rice synteny relationships to rapidly isolate and characterize homologues in maize, wheat, barley and sorghum. ;Gramene Modules ;;Note – The presentation of the modules is organized according to their location on the navigation bar. This does not indicate that you should begin with the first module presented, nor end with the last one. Together the modules complement each other by forming the Gramene Database.; Genome browser is a dynamic graphical display used to browse genomes. Use it to: Search for genes and other features identified from the Rice-Japonica, Maize and Arabidopsis genomes, as well as features from maize, sorghum, barley and wheat that were mapped on the rice genome. View the location of a particular feature on the rice genome Examine neighboring genes and markers. View the gene model of a candidate gene of interest in order to design primers. Identify the genomic sequence to which a particular gene is mapped. Look for synteny. Compare the position of features fro