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Multiple Alignment of Citation Sentences with Conditional Random Fields and Posterior Decod.pdf

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Multiple Alignment of Citation Sentences with Conditional Random Fields and Posterior Decod

Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, pp. 847–857, Prague, June 2007. c?2007 Association for Computational Linguistics Multiple Alignment of Citation Sentences with Conditional Random Fields and Posterior Decoding Ariel S. Schwartz? EECS, Computer Science Division UC Berkeley Berkeley, CA 94720-1776 sariel@ Anna Divoli, Marti A. Hearst School of Information UC Berkeley Berkeley, CA 94720-4600 {hearst,divoli}@ Abstract In scientific literature, sentences that cite re- lated work can be a valuable resource for applications such as summarization, syn- onym identification, and entity extraction. In order to determine which equivalent en- tities are discussed in the various citation sentences, we propose aligning the words within these sentences according to semantic similarity. This problem is partly analogous to the problem of multiple sequence align- ment in the biosciences, and is also closely related to the word alignment problem in sta- tistical machine translation. In this paper we address the problem of multiple citation concept alignment by combining and mod- ifying the CRF based pairwise word align- ment system of Blunsom Cohn (2006) and a posterior decoding based multiple se- quence alignment algorithm of Schwartz Pachter (2007). We evaluate the algorithm on hand-labeled data, achieving results that improve on a baseline. 1 Introduction The scientific literature of biomedicine, genomics, and other biosciences is a rich, complex, and con- tinually growing resource. With appropriate infor- mation extraction and retrieval tools, bioscience re- searchers can use the contents of the literature to further their research goals. With online full text ?Current address: Department of Bioengineering, Univer- sity of California, San Diego, La Jolla, CA 92093-0412. Email: sariel@. of journal articles finally becoming the norm, new forms of citation analysis become possible