Differential Gene Expression in Soybean Leaf Tissues at Late Developmental Stages under Drought Stress Revealed by Genome-Wide Transcriptome Analysis 英文参考文献.docVIP

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Differential Gene Expression in Soybean Leaf Tissues at Late Developmental Stages under Drought Stress Revealed by Genome-Wide Transcriptome Analysis 英文参考文献.doc

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Differential Gene Expression in Soybean Leaf Tissues at Late Developmental Stages under Drought Stress Revealed by Genome-Wide Transcriptome Analysis 英文参考文献

DifferentialGeneExpressioninSoybeanLeafTissuesat LateDevelopmentalStagesunderDroughtStress RevealedbyGenome-WideTranscriptomeAnalysis DungTienLe1,2,RieNishiyama1,YasukoWatanabe1,MahoTanaka3,MotoakiSeki3,LeHuyHam2, KazukoYamaguchi-Shinozaki4,KazuoShinozaki5,Lam-SonPhanTran1* 1Signaling Pathway Research Unit, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan, 2National Key Laboratory of Plant Cell Biotechnology and Agricultural Genetics Institute, Vietnamese Academy of Agricultural Science, Hanoi, Vietnam, 3Plant Genomic Network Research Team, RIKEN Plant Science Center, Yokohama, Kanagawa,Japan,4JapanInternationalResearchCenterforAgriculturalSciences,Tsukuba,Ibaraki,Japan,5GeneDiscoveryResearchGroup,RIKENPlantScienceCenter, Yokohama,Kanagawa,Japan Abstract Theavailabilityofcompletegenomesequenceofsoybeanhasallowedresearchcommunitytodesignthe66KAffymetrix SoybeanArrayGeneChipforgenome-wideexpressionprofilingofsoybean.Inthisstudy,wecarriedoutmicroarrayanalysis of leaf tissues of soybean plants, which were subjected to drought stress from late vegetative V6 and from full bloom reproductive R2 stages. Our data analyses showed that out of 46093 soybean genes, which were predicted with high confidenceamongapproximately66000putativegenes,41059genescouldbeassignedwithaknownfunction.Usingthe criteria of a ratio change .=2 and a q-value,0.05, we identified 1458 and 1818 upregulated and 1582 and 1688 downregulated genes in drought-stressed V6 and R2 leaves, respectively. These datasets were classified into 19 most abundantbiologicalcategorieswithsimilarproportions.Therewereonly612and463genesthatwereoverlappedamong theupregulatedanddownregulatedgenes,respectively,inbothstages,suggestingthatbothconservedandunconserved pathways mightbeinvolved in regulation ofdrought responsein differentstages of plantdevelopment. Acomparative expression analysis using our datasets and that of drought stressed Arabidopsis leaves revealed the existence of both conserved and species-specific m