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Gene and Genome Parameters of Mammalian Liver Circadian Genes (LCGs) 英文参考文献
GeneandGenomeParametersofMammalianLiver
CircadianGenes(LCGs)
GangWu1,2,JiangZhu1,3,FuhongHe1,4,WeiweiWang1,5,SongnianHu1,JunYu1*
1CASKeyLaboratoryofGenomeSciencesandInformation,BeijingInstituteofGenomics,ChineseAcademyofSciences,Beijing,China,2GraduateUniversityofChinese
AcademyofSciences,Beijing,China,3DepartmentofPathology,MassachusettsGeneralHospitalandHarvardMedicalSchool,Boston,Massachusetts,UnitedStatesof
America,4Laboratory ofDiseaseGenomicsandIndividualizedMedicine,BeijingInstitute ofGenomics,Chinese Academy ofSciences, Beijing,China, 5Department of
Medicine,UniversityofAlberta,Edmonton,Alberta,Canada
Abstract
Themammaliancircadiansystemcontrolsvariousphysiologyprocessesandbehaviorresponsesbyregulatingthousandsof
circadiangeneswithrhythmicexpressions.Inthisstudy,weredefinedcircadian-regulatedgenesbasedonpublishedresults
inthemouseliverandcomparedthemwithothergenegroupsdefinedrelativetocircadianregulations,especiallythenon-
circadian-regulatedgenesexpressedinliveratmultiplemolecularlevelsfromgenepositiontoproteinexpressionbasedon
integrativeanalysesofdifferentdatasetsfromtheliterature.Basedontheintra-tissueanalysis,thelivercircadiangenesor
LCGsshowuniquefeatureswhencomparedtoothergenegroups.First,LCGsingeneralhavelessneighboringgenesand
largerinbothgenomicand39-UTRlengthsbutshorterinCDS(codingsequence)lengths.Second,LCGshavehighermRNA
andproteinabundance,highertemporalexpressionvariations,andshortermRNAhalf-life.Third,morethan60%ofLCGs
formmajorco-expressionclusterscenteredinfourtemporalwindows:dawn,day,dusk,andnight.Inaddition,largerand
smallerLCGsarefoundmainlyexpressedinthedayandnighttemporalwindows,respectively,andwebelievethatLCGsare
well-partitionedintothegeneexpressionregulatorynetworkthattakesadvantageofgenesize,expressionconstraint,and
chromosomal architecture. Based on inter-tissue analysis, more than half of LCGs are ubiquitously expressed in multiple
tissues but only show rhythmical expression in one or limited number of tissues. LCGs show
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