Nucleotide diversity and linkage disequilibrium in 11 expressed resistance candidate genes in Lolium perenne 英文参考文献.docVIP
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Nucleotide diversity and linkage disequilibrium in 11 expressed resistance candidate genes in Lolium perenne 英文参考文献
BMC Plant Biology
BioMedCentral
Research article
Open Access
Nucleotide diversity and linkage disequilibrium in 11 expressed
resistance candidate genes in Lolium perenne
Yongzhong Xing1,2, Uschi Frei1, Britt Schejbel1, Torben Asp1 and
Thomas Lübberstedt*1
Address: 1University of ?rhus, Faculty of Agricultural Sciences, Department of Genetics and Biotechnology, Research Centre Flakkebjerg, Slagelse
DK-4200, Denmark and 2National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
Email: Yongzhong Xing - yzxing@; Uschi Frei - Uschi.Frei@agrsci.dk; Britt Schejbel - brittsa@mail.tele.dk;
Torben Asp - Torben.Asp@agrsci.dk; Thomas Lübberstedt* - Thomas.Luebberstedt@agrsci.dk
* Corresponding author
Published: 4 August 2007
Received: 11 April 2007
Accepted: 4 August 2007
BMC Plant Biology 2007, 7:43
doi:10.1186/1471-2229-7-43
This article is available from: /1471-2229/7/43
? 2007 Xing et al; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Background: Association analysis is an alternative way for QTL mapping in ryegrass. So far,
knowledge on nucleotide diversity and linkage disequilibrium in ryegrass is lacking, which is essential
for the efficiency of association analyses.
Results: 11 expressed disease resistance candidate (R) genes including 6 nucleotide binding site
and leucine rich repeat (NBS-LRR) like genes and 5 non-NBS-LRR genes were analyzed for
nucleotide diversity. For each of the genes about 1 kb genomic fragments were isolated from 20
heterozygous genotypes in ryegrass. The number of haplotypes per gene ranged from 9 to 27. On
average, one single nucleotide polymorphism (SNP) was present per 33 bp between two randomly
sampled sequences
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