Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana 英文参考文献.docVIP
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Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana 英文参考文献
Chenetal.BMCPlantBiology2010,10:201
/1471-2229/10/201
RESEARCH ARTICLE
OpenAccess
TransferRNAmodificationsandgenesfor
modifyingenzymesinArabidopsisthaliana
PengChen1,2,GunillaJ?ger3,BoZheng2*
Abstract
Background:Inalldomainsoflife,transferRNA(tRNA)moleculescontainmodifiednucleosides.Modificationsto
tRNAsaffecttheircodingcapacityandinfluencecodon-anticodoninteractions.Nucleosidemodificationdeficiencies
haveadiverserangeofeffects,fromdecreasedvirulenceinbacteria,neuralsystemdiseaseinhuman,andgene
expressionandstressresponsechangesinplants.ThepurposeofthisstudywastoidentifygenesinvolvedintRNA
modificationinthemodelplantArabidopsisthaliana,tounderstandthefunctionofnucleosidemodificationsin
plantgrowthanddevelopment.
Results:Inthisstudy,weestablishedamethodforanalyzingmodifiednucleosidesintRNAsfromthemodelplant
species,Arabidopsisthalianaandhybridaspen(Populustremula×tremuloides).21modifiednucleosidesintRNAs
wereidentifiedinbothspecies.ToidentifythegenesresponsiblefortheplanttRNAmodifications,weperformed
globalanalysisoftheArabidopsisgenomeforcandidategenes.Basedontheconserveddomainsofhomologsin
SacccharomycescerevisiaeandEscherichiacoli,morethan90geneswerepredictedtoencodetRNAmodifying
enzymesintheArabidopsisgenome.TranscriptaccumulationpatternsforthegenesinArabidopsisandthe
phylogeneticdistributionofthegenesamongdifferentplantspecieswereinvestigated.Transcriptsforthemajority
oftheArabidopsiscandidategeneswerefoundtobemostabundantinrosetteleavesandshootapices.Whereas
mostofthetRNAmodifyinggenefamiliesidentifiedintheArabidopsisgenomewasfoundtobepresentinother
plantspecies,therewasabigvariationinthenumberofgenespresentforeachfamily.
Throughalossoffunctionmutagenesisstudy,weidentifiedfivetRNAmodificationgenes(AtTRM10,AtTRM11,
AtTRM82,AtKTI12andAtELP1)responsibleforfourspecificmodifiednucleosides(m1G,m2G,m7Gandncm5U),
respectively(twogenes:AtKTI12andAtELP1identifiedforncm5Umodification).TheAtTRM11mutantexhibitedan
early-floweringphenotype,andtheAtELP1mutanthadnarrowleave
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