Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines 英文参考文献.docVIP
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Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines 英文参考文献
BMC Plant Biology
BioMedCentral
Research article
Open Access
Transcriptomic profiling of mature embryo from an elite
super-hybrid rice LYP9 and its parental lines
Xiaomeng Ge?1,2, Weihua Chen?1, Shuhui Song1,2, Weiwei Wang1,2,
Songnian Hu*1 and Jun Yu*1
Address: 1CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, 100029,
PR China and 2Graduate University of Chinese Academy of Sciences, Beijing, 100049, PR China
Email: Xiaomeng Ge - gexiaomeng@; Weihua Chen - chen@cs.uni-duesseldorf.de; Shuhui Song - songshh@;
Weiwei Wang - wangweiwei@; Songnian Hu* - husn@; Jun Yu* - junyu@
* Corresponding authors ?Equal contributors
Published: 11 November 2008
Received: 20 June 2008
Accepted: 11 November 2008
BMC Plant Biology 2008, 8:114
doi:10.1186/1471-2229-8-114
This article is available from: /1471-2229/8/114
? 2008 Ge et al; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Background: The mature embryo of rice (Oryza sativa, L.) is a synchronized and integrated tissue
mass laying the foundation at molecular level for its growth, development, and differentiation
toward a developing and ultimately a mature plant. We carried out an EST (expressed-sequence-
tags)-based transcriptomic study, aiming at gaining molecular insights into embryonic development
of a rice hybrid triad–an elite hybrid rice LYP9 and its parental lines (93-11 and PA64s)–and possible
relatedness to heterosis.
Results: We generated 27,566 high-quality ESTs from cDNA libraries made from mature rice
embryos. We classified these ESTs into 7,557 unigenes (2,511 contigs and 5,046 singletons) and
7,250 (95.9%) of them were annotated. We noticed that the high-abundanc
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