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A standard variation file format for human genome sequences
Reeseetal.GenomeBiology2010,11:R88
/2010/11/8/R88
METHOD
OpenAccess
Astandardvariationfileformatforhuman
genomesequences
MartinGReese1*,BarryMoore2,ColinBatchelor3,FidelSalas1,FionaCunningham4,GaborTMarth5,LincolnStein6,
PaulFlicek4,MarkYandell2,KarenEilbeck7*
Abstract
HerewedescribetheGenomeVariationFormat(GVF)andthe10Gendataset.GVF,anextensionofGenericFeature
Formatversion3(GFF3),isasimpletab-delimitedformatforDNAvariantfiles,whichusesSequenceOntologyto
describegenomevariationdata.The10Gendataset,tenhumangenomesinGVFformat,isfreelyavailableforcom-
munityanalysisfromtheSequenceOntologywebsi
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