Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.docVIP
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Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
Lévesqueetal.GenomeBiology2010,11:R73
/2010/11/7/R73
RESEARCH
OpenAccess
Genomesequenceofthenecrotrophicplant
pathogenPythiumultimumrevealsoriginal
pathogenicitymechanismsandeffectorrepertoire
CAndréLévesque1,2,HenkBrouwer3?,LilianaCano4?,JohnPHamilton5?,CarsonHolt6?,EdgarHuitema4?,
SylvainRaffaele4?,GreggPRobideau1,2?,MarcoThines7,8?,JoeWin4?,MarceloMZerillo9?,GordonWBeakes10,
JeffreyLBoore11,DanaBusam12,BernardDumas13,SteveFerriera12,SusanIFuerstenberg11,ClaireMMGachon14,
ElodieGaulin13,FrancineGovers15,16,LauraGrenville-Briggs17,NeilHorner17,JessicaHostetler12,RaysHYJiang18,
JustinJohnson12,TheerapongKrajaejun19,HainingLin5,HaroldJGMeijer15,BarryMoore6,PaulMorris20,
VipapornPhuntmart20,DanielaPuiu12,JyotiShetty12,JasonEStajich21,SuchetaTripathy22,StephanWawra17,
PietervanWest17,BrettRWhitty5,PedroMCoutinho23,BernardHenrissat23,FrankMartin24,PaulDThomas25,
BrettMTyler22,RonaldPDeVries3,SophienKamoun4,MarkYandell6,NedTisserat9,CRobinBuell5*
Abstract
Background:Pythiumultimumisaubiquitousoomyceteplantpathogenresponsibleforavarietyofdiseasesona
broadrangeofcropandornamentalspecies.
Results:TheP.ultimumgenome(42.8Mb)encodes15,290genesandhasextensivesequencesimilarityand
syntenywithrelatedPhytophthoraspecies,includingthepotatoblightpathogenPhytophthorainfestans .Whole
transcriptomesequencingrevealedexpressionof86%ofgenes,withdetectabledifferentialexpressionofsuitesof
genesunderabioticstressandinthepresenceofahost.Thepredictedproteomeincludesalargerepertoireof
proteinsinvolvedinplantpathogeninteractions,although,surprisingly,theP.ultimumgenomedoesnotencode
anyclassicalRXLReffectorsandrelativelyfewCrinklergenesincomparisontorelatedphytopathogenicoomycetes.
AlowernumberofenzymesinvolvedincarbohydratemetabolismwerepresentcomparedtoPhytophthora
species,withthenotableabsenceofcutinases,suggestingasignificantdifferenceinvirulencemechanisms
betweenP.ultimumandmorehost-specificoomycetespecies.Althoughweobservedahighdegreeoforthology
withPhytophthoragenomes,therewerenovelfeature
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