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a comparative gene expression database for invertebrates比较基因表达数据库无脊椎动物
A comparative gene expression database for
invertebrates
Ormestad et al.
Ormestad et al. EvoDevo 2011, 2:17
/content/2/1/17 (24 August 2011)
Ormestad et al. EvoDevo 2011, 2:17
/content/2/1/17
DATABASE Open Access
A comparative gene expression database for
invertebrates
*
Mattias Ormestad, Mark Q Martindale and Eric Röttinger
Abstract
Background: As whole genome and transcriptome sequencing gets cheaper and faster, a great number of ‘exotic’
animal models are emerging, rapidly adding valuable data to the ever-expanding Evo-Devo field. All these new
organisms serve as a fantastic resource for the research community, but the sheer amount of data, some
published, some not, makes detailed comparison of gene expression patterns very difficult to summarize - a
problem sometimes even noticeable within a single lab. The need to merge existing data with new information in
an organized manner that is publicly available to the research community is now more necessary than ever.
Description: In order to offer a homogenous way of storing and handling gene expression patterns from a variety
of organisms, we have developed the first web-based comparative gene expression database for invertebrates that
allows species-specific as well as cross-species gene expression comparisons. The database can be queried by gene
name, developmental stage and/or expression domains.
Conclusions: This database provides a unique tool for the Evo-Devo research community that allows the retrieval,
analysis and comparison of gene expression patterns within or among species. In addition, this database enables a
quick identification of putativ
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