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rich an r package to analyse species richness富r包分析物种丰富度
Diversity 2011, 3, 112-120; doi:10.3390/d3010112
OPEN ACCESS
diversity
ISSN 1424-2818
/journal/diversity
Article
rich: An R Package to Analyse Species Richness
Jean-Pierre Rossi
INRA, UMR CBGP (INRA/IRD/Cirad/Montpellier SupAgro), Campus International de Baillarguet, CS
30016, F-34988 Montferrier-sur-Lez cedex, France; E-Mail: rossi@supagro.inra.fr;
Tel.: +33-4-30-63-04-30; Fax: +33-4-99-62-33-45
Received: 18 January 2011 / Accepted: 10 February 2011 / Published: 16 February 2011
Abstract: The paper describes rich, a new R package to perform species richness
estimation and comparison. Species richness is the simplest surrogate for the more complex
concept of species biodiversity. It is relatively easy to assess although estimations strongly
depend on sampling intensity with the consequence that richness estimations should be
standardized to perform valid comparisons. The R package rich allows such corrections
as well as the computation of various statistics and implements different randomization tests
to compare cumulative and average species richness of two communities. These tests are
useful for ranking sites or communities which is a classical goal in restoration ecology and
conservation biology.
Keywords: species richness; rarefaction; bootstrap; randomization test; biodiversity;
community ecology
1. Introduction
Species richness is a basic surrogate for the more complex concept of ecological diversity [1]. It
is broadly used as a measure of biodiversity with various ob
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