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robust an integrated genomics resource for the root and bulb crop families apiaceae and alliaceae健壮的一个完整的基因组资源根和作物家庭伞形科和alliaceae灯泡
Bhasi et al. BMC Plant Biology 2010, 10:161
/1471-2229/10/161
DATABASE Open Access
RoBuST: an integrated genomics resource for the
root and bulb crop families Apiaceae and
Alliaceae
1 2 2 3 3† 3†
Ashwini Bhasi , Doug Senalik , Philipp W Simon , Brajendra Kumar , Vinu Manikandan , Philge Philip ,
Periannan Senapathy1,3*
Abstract
Background: Root and bulb vegetables (RBV) include carrots, celeriac (root celery), parsnips (Apiaceae), onions,
garlic, and leek (Alliaceae)—food crops grown globally and consumed worldwide. Few data analysis platforms are
currently available where data collection, annotation and integration initiatives are focused on RBV plant groups.
Scientists working on RBV include breeders, geneticists, taxonomists, plant pathologists, and plant physiologists
who use genomic data for a wide range of activities including the development of molecular genetic maps,
delineation of taxonomic relationships, and investigation of molecular aspects of gene expression in biochemical
pathways and disease responses. With genomic data coming from such diverse areas of plant science, availability
of a community resource focused on these RBV data types would be of great interest to this scientific community.
Description: The RoBuST database has been developed to initiate a platform for collecting and organizing
genomic information useful for RBV researchers. The current release of RoBuST contains genomics data for 294
Alliaceae and 816 Apiaceae plant species and has the following features: (1) comprehensive sequence annotations
of 3663 genes 5959 RNAs, 22,723 ESTs and 11,438 regulatory sequence elements from Apiaceae and Alliaceae plant
families; (2) graphical tools for vis
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