tentative mapping of transcription-induced interchromosomal interaction using chimeric est and mrna data初步的映射transcription-induced染色体间交互使用嵌合est和mrna数据.pdfVIP
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tentative mapping of transcription-induced interchromosomal interaction using chimeric est and mrna data初步的映射transcription-induced染色体间交互使用嵌合est和mrna数据
Tentative Mapping of Transcription-Induced
Interchromosomal Interaction using Chimeric EST and
mRNA Data
Per Unneberg*, Jean-Michel Claverie
Structural and Genomic Information Laboratory, Centre National de la Recherche Scientifique (CNRS) UPR-2589, Institut de Biologie Structurale et
Microbiologie, Marseille, France
Recent studies on chromosome conformation show that chromosomes colocalize in the nucleus, bringing together active
genes in transcription factories. This spatial proximity of actively transcribing genes could provide a means for RNA interaction
at the transcript level. We have screened public databases for chimeric EST and mRNA sequences with the intent of mapping
transcription-induced interchromosomal interactions. We suggest that chimeric transcripts may be the result of close
encounters of active genes, either as functional products or ‘‘noise’’ in the transcription process, and that they could be used as
probes for chromosome interactions. We have found a total of 5,614 chimeric ESTs and 587 chimeric mRNAs that meet our
selection criteria. Due to their higher quality, the mRNA findings are of particular interest and we hope that they may serve as
food for thought for specialists in diverse areas of molecular biology.
Citation: Unneberg P, Claverie J-M (2007) Tentative Mapping of Transcription-Induced Interchromosomal Interaction using Chimeric EST and mRNA
Data. PLoS ONE 2(2): e254. doi:10.1371/journal.pone.0000254
INTRODUCTION fact, the chromosome is now known to be a highly mobile
With the development of increasingly sophisticated large-scale structure, with territories intermingling significantly in the nucleus
sequencing and microarray techniques, the known transcriptome [16].
continues to grow. Even though the idea that one gene produces
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