unidrug-target a computational tool to identify unique drug targets in pathogenic bacteriaunidrug-target计算工具在病原菌识别独特的药物靶点.pdfVIP
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unidrug-target a computational tool to identify unique drug targets in pathogenic bacteriaunidrug-target计算工具在病原菌识别独特的药物靶点
UniDrug-Target: A Computational Tool to Identify
Unique Drug Targets in Pathogenic Bacteria
Sree Krishna Chanumolu, Chittaranjan Rout, Rajinder S. Chauhan*
Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh, India
Abstract
Background: Targeting conserved proteins of bacteria through antibacterial medications has resulted in both the
development of resistant strains and changes to human health by destroying beneficial microbes which eventually become
breeding grounds for the evolution of resistances. Despite the availability of more than 800 genomes sequences, 430
pathways, 4743 enzymes, 9257 metabolic reactions and protein (three-dimensional) 3D structures in bacteria, no pathogen-
specific computational drug target identification tool has been developed.
Methods: A web server, UniDrug-Target, which combines bacterial biological information and computational methods to
stringently identify pathogen-specific proteins as drug targets, has been designed. Besides predicting pathogen-specific
proteins essentiality, chokepoint property, etc., three new algorithms were developed and implemented by using protein
sequences, domains, structures, and metabolic reactions for construction of partial metabolic networks (PMNs),
determination of conservation in critical residues, and variation analysis of residues forming similar cavities in proteins
sequences. First, PMNs are constructed to determine the extent of disturbances in metabolite production by targeting a
protein as drug target. Conservation of pathogen-specific protein’s critical residues involved in cavity formation and
biological function determined at domain-level with low-matching sequences. Last, variation analysis of
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