分子模拟软件汇总.docx

Molecular Modeling Software汇总（附每个软件的链接）3DNA 2.0 – Vsualization of Three-Dimensional Nucleic Acid StructuresActiveICM 1.1.6 – PowerPoint Web Browsers Plugin to Display 3D ModulesAlloPathFinder 1.1 – Compute Likely Allosteric Pathways in ProteinsAlphaMol 1.0 – Tools for Biomolecular GeometryAMBER 11 – Assisted Model Building with Energy RefinementAmberTools 1.5 – Molecular Dynamics SimulationANTHEPROT 3D 1.0.162- Molecule Viewer to look at PDB filesAPBS 1.3 – Evaluat Electrostatic Properties of Nanoscale Biomolecular SystemArgusLab 4.0.1 – Molecular Modeling, Graphics Drug Design ProgramAscalaph 1.7.12 – Molecular Modelling SuiteAtVol 1.2 – Atomic Volume CalculationAUDocker v1 – GUI for AutoDock VinaAutobondrot 2.0 – Generate Multiple Molecular ConformationAutoDock 4.2.3 / AutoDockTools 1.5.6 – Suite of Automated Docking ToolsAutoDock Vina 1.1.2 – Molecular Docking and Virtual Screening ProgramAutodock/Vina plugin for PyMOLAutoGrow 2.0.4 – Use AutoDock Vina in Protein Inhibitor DesignAvogadro 1.0.3 – Molecule Editor VisualizerAVP 1.3 – Calculate Protein Void Volumes and Packing QualityAxPyMOL 1.0r1 – PowerPoint Plug-In for Embedding 3D Molecular Images AnimationsB 1.0alpha – Biomolecular Modeling PackageBALLView 2.0-r1 – Molecular Modeling VisualizationBenchware? 3D Explorer 2.6 – 3D Chemical VisualizationBioclipse 2.4 – Life Sciences WorkbenchBiodesigner 0.75 – Molecular Modeling VisualizationBioEditor 1.6.1 – Present Macromolecular Structure Structural AnnotationBioViewer 1.5.7 – Read only version of BioEditorBiskit 2.3.1 – Python Platform for Structural BioinformaticsBndLst 1.6 – List Covalent H-bonded Neighboring AtomsC2A 1.0 – Coarse to AtomicCCOMP 3.70 – Compare Ligand/Receptor ComplexesCHARMM 36 – Macromolecular Dynamics and MechanicsChemCraft 1.6 – Graphical Program for working with Quantum Chemistry ComputationChemis3D 2.89b – Java 3D Molecular Viewer AppletChemitorium 3.5 – Molecule Editor 3D Chemical Structure ViewerChime 2.6SP8 – Display 2D / 3D M