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Working with FreeSurfer Regions-of-Interest (ROIs)：与感兴趣的区域（ROI）的工作规律
* Left: R1 intensity value comparisons across gray matter regions (R1 is inverse of T1); Top right: Thickness of specific regions compared between young participants and old participants. Bottom right: Comparisons of physiological noise in fmri studies by point measure. * * * * Some subjects don’t have all these areas; reliability goes down * * * * * * annotation2label = aparc areas made into label format; volcluster = a volume made into a cluster; surf cluster = a surface made into a cluster; cor2label = a volume/segmentation made into a label; label2label = map a label from one subject to another * * * * * * * * * * * * * * * points as in how many vertex points are included within the label * * ROI = Region of Interest; Talk is going to cover the two ways to analyze an ROI, etc. * Vertex value will have intensity info from T1, Thickness, sulcal depth, etc. Since the way we derive ROIs is not by a map only (it is highly individualized to each subject’s anatomy) this allows you to take the mean vertex info from a region and get an accurate measure you can compare across subjects. i.e. average intensity over hippocampus * How did we come up with these atlases that have the ROIs? CMA = Center for Morphemetric Analysis. We are creating a probabilistic Atlas based on this information. * from atlas get prior information that help us decide how to do our images and from there fine tune * compute a dice coefficient for each N to see how much the automatic labeled and hand labeled overlap * Clusters are blobs seen in signifcance maps and funtional activation. These are commands in freesurfer that create these clusters. Mask out = to see only a certain area. Similar to clusters just created differently. Extract table of subcortical volumes of all structures for all subjects asegstats2table --subjects 001 002 003 004 005 --meas volume --stats aseg.stats --tablefile aseg.table.txt Applies to wmparc.stats too: (--stats wmparc.stats) Output is a simple ASCII te
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