生物途径数字化策略及其在共生固氮网络数据库中实现-digital strategy of biological pathway and its implementation in symbiotic nitrogen fixation network database.docxVIP

华中科技大学硕士学位论文 华 中 科 技 大 学 硕 士 学 位 论 文 IV IV rhizobium-plant symbiosis is the system including two species, and including the metabolism pathways, the signal transduction pathways, and the gene regulation pathways in the same time. To use the nitrogen fixation in symbiosis more effective, we must research the rhizobium-plant symbiosis systemic, and the basic work is built the database of the rhizobium-plant symbiosis. But, the pathways of the mechanism of the nitrogen fixation in rhizobium-plant symbiosis are distributed in different databases or event still in research papers, there have not a systemic describe and relevant database. And the digitized strategy in this article can be used to build a database of nitrogen fixation in symbiosis. So, we develop a set of software, including object edit, pathway edit, pathway querying, pathway visualizing, it make the work more efficiently. We also build a database of research method in nitrogen fixation pathway, and according the statement, the record in the database is most the method used in protein interaction research. Database provide an experiment edit to modularize the experiment process, the user can design the experiment on computer and print it in picture to referent when doing experiment. And using the web designer, user can design the experiment on the web. Key Words：Bioinformatics Pathway database Pathway Symbiosome PAGE VI PAGE VI 主要符号和缩略词表 ADW Animal Diversity Web AMT Ammoniumtransporter 铵转运蛋白 API Application Program Interface 应用程序接口 AS Asparagine Synthetase 天冬酰胺合成酶 ASCII American Standard Code for Information Interchange 美国信息交换标准码 BBOP Berkeley Bioinformatics and Ontology Project BRITE Biomolecular Relations in Information Transmission and Expressio B/S Browser/Server 浏览器/服务器 BSD Biodegradative Strain Database BTs Bacteroids 类菌体 CARO Common Anatomy Reference Ontology CGI Common Gateway Interface 通用网关接口 CHEBI Chemical entities of biological interest DDANAT Dictyostelium discoideum anatomy