野生稻_短叶稻全基因组测序揭示了水稻基因组进化的机制.pdf

ARTICLE Received 1 Oct 2012 | Accepted 11 Feb 2013 | Published 12 Mar 2013 DOI: 10.1038/ncomms2596 OPEN Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution 1 2 3 2 2 1 1 Jinfeng Chen , Quanfei Huang , Dongying Gao , Junyi Wang , Yongshan Lang , Tieyan Liu , Bo Li , 1 4 1 5 6 1 Zetao Bai , Jose Luis Goicoechea , Chengzhi Liang , Chengbin Chen , Wenli Zhang , Shouhong Sun , 1 1 1 1 1 1 2 2 Yi Liao , Xuemei Zhang , Lu Yang , Chengli Song , Meijiao Wang , Jinfeng Shi , Geng Liu , Junjie Liu , 2 2 2 2 2 2 2 2 2 Heling Zhou , Weili Zhou , Qiulin Yu , Na An , Yan Chen , Qingle Cai , Bo Wang , Binghang Liu , Jiumeng Min , 2 2 2 2 2 5 6 3 Ying Huang , Honglong Wu , Zhenyu Li , Yong Zhang , Ye Yin , Wenqin Song , Jiming Jiang , Scott A. Jackson , Rod A. Wing4, Jun Wang2,7,8 Mingsheng Chen1 The wild species of the genus Oryza contain a largely untapped reservoir of agronomically important genes for rice improvement. Here we report the 261-Mb de novo assembled genome sequence of Oryza brachyantha. Low activity of long-terminal repeat retrotransposons and massive internal deletions of ancient long-terminal repeat elements lead to the compact genome of Oryza brachyantha. We model 32,038 protein-coding genes in the Oryz