Genetic structure and differentiation of Oryza sativa L.in China英文版本.pdf

Theor Appl Genet (2009) 119:1105–1117 DOI 10.1007/s00122-009-1112-4 ORIGINAL PAPER Genetic structure and differentiation of Oryza sativa L. in China revealed by microsatellites Dongling Zhang Æ Hongliang Zhang Æ Meixing Wang Æ Junli Sun Æ Yongwen Qi Æ Fengmei Wang Æ Xinghua Wei Æ Longzhi Han Æ Xiangkun Wang Æ Zichao Li Received: 12 November 2008 / Accepted: 13 July 2009 / Published online: 1 August 2009 Springer-Verlag 2009 Abstract China is one of the largest centers of genetic imposed on the subspecies led to further differentiation, but diversity of Oryza sativa L. in the world. Using a geneti- the variation within each subspecies resulted from different cally representative primary core collection of 3,024 rice causes. Indica, under tropical-like or lowland-like envi- landraces in China, we analyzed the genetic structure and ronments, exhibited clear differentiation among seasonal intraspecific differentiation of O. sativa, and the directional ecotypes, but not among soil-watery ecotypes; and japon- evolution of SSR. The genetic structure was investigated ica showed clear differences between soil water regime by model-based structure analysis and construction of ecotypes, but not among seasonal ecotypes. Chinese cul- neighbor-joining phylogenetic tree. Comparison between tivated rice took on evident directional evolution in genetic structure and predefined populations according to microsatellite allele size at several aspects, such as sub- Ting’s taxonomic system revealed a hierarchical genetic species and geographical populations. Japonica has smaller structure: two distinct subspecies, each with three ecotypes allele sizes than indica, and this may partly be the result of and different numbers of ge