ReDE一个基于正则表达式的生物数据抽取方法.pdf

IsSN 111777／TP 计算机研究与发展 CN of Researchand J。umalComputer Development ReDE：一个基于正则表达式的生物数据抽取方法 邓绪斌1 朱扬勇2‘3 1(浙江财经学院信息学院杭州310018) 2(复旦大学计算机与信息技术系上海200433) 3(上海生物信息技术研究中心上海201203) (xbdeng@fudan．edu．cn) ReDE：A Methodfor Data Extracting RegularExpression-Based Biological XubinlandZhu Deng Ya“gyon92’3 1(＆^∞f矿In如rm口￡iDn，办目缸ng【h㈣z甜0，RM皑＆E∞删把s，H口”g吐o“310018) nd 200433) 2(瑰却“优Pnf。，凸州户“枷wJ，咖删口f20”丁h^nd唧’，n出”m㈣印，岛Ⅱ”曲“T 201203) 3(舶nH加ⅡI＆柚圹，0rB帅zn，0例￡㈣1矾”“哪，，S^Ⅱ哪n2 builda and Abstract datafrom datas。urcesto biologicaI queryanalysisplatform Extracting heterogeneous is research extractlonconcerns f。r scientists ahot process marly biologlcal currently topic．Ingeneral，data of to onemetadatafrom fulluse metadata interdependentmetadata．Maklngd印endenciesamong generate overhead． dataextractlonmethodsoverl00k anothercanreducemetadatamaintenanceHowever，many and muchefforttoconstructandmaintainmetadata．Inthis these many paper，a dependenciesrequire thls a namedasReDEis t。avoid method prop。sed drawback：bybuildlng regularexpresslon(RE)based forRE RE_based for rclationaldatabaseschem