Sequencing and de novo Analysis of Crassostrea angulata (Fujian Oyster) from 8 Different Developing Phases Using 454 GSFlx 英文参考文献.docVIP
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Sequencing and de novo Analysis of Crassostrea angulata (Fujian Oyster) from 8 Different Developing Phases Using 454 GSFlx 英文参考文献
SequencinganddenovoAnalysisofCrassostrea
angulata(FujianOyster)from8DifferentDeveloping
PhasesUsing454GSFlx
JiQin1,2.,ZixiaHuang1,2.,JunChen1,2,QuanZou3,WeiweiYou1,2,CaihuanKe1,2
*
1StateKeyLaboratoryofMarineEnvironmentalScience,XiamenUniversity,Xiamen,China,2CollegeofOceanandEarthSciences,XiamenUniversity,Xiamen,China,
3CollegeofInformationScienceandTechnology,XiamenUniversity,Xiamen,China
Abstract
Research on the mechanism for early development of shellfish, such as body plan, shell formation, settlement and
metamorphosisiscurrentlyanactiveresearchfield.However,studieswerestilllimitedandnotdeepenoughbecauseofthe
lack of genomic resources such as genome or transcriptome sequences. In the present research, de novo transcriptome
sequencingwasperformedforCrassostreaangulata,themosteconomicallyimportantculturedoysterspeciesinChina,at
eightearlydevelopmentalstagesusingthe454sequencingtechnology.Atotalof555,215readswereproducedwithan
average length of 309 nucleotides that were thenassembled into 10,462 contigs. As determined by GO annotation and
KEGGpathwaymapping,functionalannotationoftheunigenesrecovereddiversebiologicalfunctionsandprocesses.Six
uniquesequencesrelatedtosettlement,metamorphosisandgrowthweresubsequentlyanalyzedbyreal-timePCR.Given
thelackofwholegenomeinformationforoysters,transcriptomeanddenovoanalysisofC.angulatafromtheeightdifferent
developing phases will provide important and useful information on early development mechanism and help genetic
breedingofshellfish.
Citation:QinJ,HuangZ,ChenJ,ZouQ,YouW,etal.(2012)SequencinganddenovoAnalysisofCrassostreaangulata(FujianOyster)from8DifferentDeveloping
PhasesUsing454GSFlx.PLoSONE7(8):e43653.doi:10.1371/journal.pone.0043653
Editor:TimothyRavasi,KingAbdullahUniversityofScienceandTechnology,SaudiArabia
ReceivedApril15,2012;AcceptedJuly24,2012;PublishedAugust27,2012
Copyright:?2012Qinetal.Thisisanopen-accessarticledistributedunderthetermsoftheCreativeCommonsAttributionLicense,whichpermitsunrestricted
use,distr
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