原创力文档annotation, submission and screening of repetitive elements in repbase repbasesubmitter and censor注释、提交和筛选重复元素repbase repbasesubmitter和审查.pdfVIP
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annotation, submission and screening of repetitive elements in repbase repbasesubmitter and censor注释、提交和筛选重复元素repbase repbasesubmitter和审查
BMC Bioinformatics BioMed Central
Software Open Access
Annotation, submission and screening of repetitive elements in
Repbase: RepbaseSubmitter and Censor
1 2 1 1
Oleksiy Kohany , Andrew J Gentles , Lukasz Hankus and Jerzy Jurka*
Address: 1Genetic Information Research Institute, 1925 Landings Drive, Mountain View, CA 94043, USA and 2School of Medicine, Stanford
University Stanford, CA 94301, USA
Email: Oleksiy Kohany - kohany@; Andrew J Gentles - andrewg@; Lukasz Hankus - lukasz@;
Jerzy Jurka* - jurka@
* Corresponding author
Published: 25 October 2006 Received: 23 May 2006
Accepted: 25 October 2006
BMC Bioinformatics 2006, 7:474 doi:10.1186/1471-2105-7-474
This article is available from: /1471-2105/7/474
© 2006 Kohany et al; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Background: Repbase is a reference database of eukaryotic repetitive DNA, which includes
prototypic sequences of repeats and basic information described in annotations. Updating and
maintenance of the database requires specialized tools, which we have created and made available
for use with Repbase, and which may be useful as a template for other curat
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