using chloroplast trnf pseudogenes for phylogeography in arabidopsis lyrata利用叶绿体trnf假基因在拟南芥lyrata phylogeography.pdfVIP
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using chloroplast trnf pseudogenes for phylogeography in arabidopsis lyrata利用叶绿体trnf假基因在拟南芥lyrata phylogeography
Diversity 2010, 2, 653-678; doi:10.3390/d2040653
OPEN ACCESS
diversity
ISSN 1424-2818
/journal/diversity
Article
Using Chloroplast trnF Pseudogenes for Phylogeography in
Arabidopsis Lyrata
1 1 2 1,
Andrew Tedder , Peter N. Hoebe , Stephen W. Ansell and Barbara K. Mable *
1 Division of Ecology and Evolutionary Biology, University of Glasgow, Glasgow, G12 8QQ, UK;
E-Mails: a.tedder.1@research.gla.ac.uk (A.T.); peter.hoebe@sac.ac.uk (P.N.H.)
2 Department of Botany, The Natural History Museum, Cromwell road, London, SW7 5BD, UK;
E-Mail: s.ansell@nhm.ac.uk
* Author to whom correspondence should be addressed; E-Mail: b.mable@bio.gla.ac.uk;
Tel.: +44-141-330-3532; Fax: +44-141-330-5971.
Received: 3 March 2010 ; in revised form: 31 March 2010 / Accepted: 13 April 2010 /
Published: 22 April 2010
Abstract: The chloroplast trnL-F region has been extensively utilized for evolutionary
analysis in plants. In the Brassicaceae this fragment contains 1–12 tandemly repeated trnF
pseudogene copies in addition to the functional trnF gene. Here we assessed the potential
of these highly variable, but complexly evolving duplications, to resolve the population
history of the model plant Arabidopsis lyrata. While the region 5’ of the duplications had
negligible sequence diversity, extensive variation in pseudogene copy number and
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