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Chapter 29
Strategies for the Purification of Membrane Proteins
Sinead Marian Smith
Abstract
Although membrane proteins account for 20–30% of the coding regions of all sequenced genomes and
play crucial roles in many fundamental cell processes, there are relatively few membranes prateins with
known 3D structure. This is likely due to technical challenges associated with membrane protein extraction,
solubilisation, and purification. Membrane proteins are classified based on the level of interaction with
membrane lipid bilayers, with peripheral membrane proteins associating non-covalently with the membrane,
and integral membrane proteins associating more strongly by means of hydrophobic interactions. Generally
speaking, peripheral membrane proteins can be purified by milder techniques than integral membrane
proteins, whose extraction requires phospholipid bilayer disruption by detergents. Here, important criteria
for strategies of membrane protein purification are addressed, with a focus on the initial stages of membrane
protein solublilisation, where problems are most frequently encountered. Protocols are outlined for the
successful extraction of peripheral membrane proteins, solubilisation of integral membrane proteins, and
detergent removal which is important not only for retaining native protein stability and biological func-
tions, but also for the efficiency of later purification techniques.
Key words: Peripheral membrane protein, Integral membrane protein, Detergent, Protein purifica-
tion, Protein solubilisation
1. Introduction
Membrane proteins are associated with the membrane of a cell or
particular organelle and are generally more problematic to purify
than water-soluble proteins. Membrane proteins represent
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