基于gcg的生物信息学web系统的构建-生物医学工程专业论文.docxVIP

中山太摹 中山太摹 2006届硕士研究生毕业论文 结果：本课题完成了对GCG WEB序列分析系统的总体搭建，完成工具选择模块、 参数设置模块、序列格式转换模块、程序运行模块和用户管理模块的编写。共完 成285个静态页面的设计和140个脚本文件的编写，并建立mysql数据库1个。 结论：系统实现了局域网内用户通过WEB浏览器对Linux服务器上GCG系统的 方便使用。从方便用户的角度出发，本系统提供了三种选择工具的方式，提供良 好的GCG子程序和其相关参数介绍，并提供序列格式的自动转换功能。系统经 过安全性、稳定性和兼容性测试，测试结果显示系统无明显安全漏洞，系统稳定 性较高，兼容性较好。本系统的构建，解决了研究人员因不了解Linux／Unix操 作系统而无法使用GCG的困难，也为国内生物信息学WEB平台的搭建提供借 鉴。 本系统在局域网的访问地址为http：／／202．116．107．185 关键词：生物信息学，GCG，B／S模式，web系统，序列分析 II 中山失哮2006届硕士研究生毕业论文 中山失哮 2006届硕士研究生毕业论文 Construction of GCG Web System MajOF：Biomedical Engineering Postgraduate student：Fu．Hao·yang Supervisor：Vice-Prof．Yuan，Heng-xin ABSTRACT Background：Based on the Linux or Unix operating system，the GCG Wisconsin Package is one of the most widely used sequence analysis tools in the world．GCG has powerful functions，such as sequence analysis，comparison and anticipation et a1． GCG contains over 140 programs and utilities coveting the cross-disciplinary needs of today’s research environment and now it is considered as the industry standard． With the development of web technology，building web servers and providing analysis on—line become the tendency of Bioinformatics．Many organizations and universities have built their own bioinformatics web platforms，such as NCBI，EBI et a1． 0bjective：While the command-line interface to GCG is not very user friendly,the graphical X-windows interface supplied by GCG can often not be used due to the lack of an X—server on PC．We decided to develop vcww interface to the GCG sequence Analysis Software Package，providing the user of convenient，safe，stable analysis service of GCG Methods：Based on Redhat Linux 7．2，GCG Wisconsin Package and APACHE web server，the author formed a GCG web system using PHP and csh scripts． Constitution：At the beginning of the paper，it concludes the background and development of bioinformatics and GCG．Then，it discusses the developer model and core—technique of the system．It lays stress on introducing the system analysis and design and shows the key techno