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Universal noninvasive detection of solid organ
transplant rejection
a,b c c,1 a,b,1
Thomas M. Snyder , Kiran K. Khush , Hannah A. Valantine , and Stephen R. Quake
aThe Howard Hughes Medical Institute and bDepartments of Applied Physics and Bioengineering, Stanford University, Stanford, CA 94305; and cDivision of
Cardiovascular Medicine, Stanford University School of Medicine, Stanford, CA 94305
Edited* by Leonard A. Herzenberg, Stanford University, Stanford, CA, and approved February 24, 2011 (received for review September 15, 2010)
It is challenging to monitor the health of transplanted organs, par- donor-specific chromosome Y has been detected in recipient urine
ticularly with respect to rejection by the host immune system. Be- and plasma (16–19). To date, most measurements of cell-free DNA
cause transplanted organs have genomes that are distinct from the in organ transplantation have been limited to the special case of
recipient’s genome, we used high throughput shotgun sequencing women who receive male organs, which has prevented the wide-
to develop a universal noninvasive approach to monitoring organ spread use of cell-free DNA as a diagnostic tool, because female
health. We analyzed cell-free DNA circulating in the blood of heart recipients of male donor organs represent less than a quarter of all
transplant procedures. HLA markers can be quantified to identify
transplant recipients and observed significantly increased levels of
donor-derived DNA in pancreas–kidney transplant recipients (20),
cell-free DNA from the donor genome at times when an endomyocar-
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