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ARTICLE
doi:10.1038/nature11244
Embryonic stem cell potency fluctuates
with endogenous retrovirus activity
1 1 1 1 2 1 3
Todd S. Macfarlan {, Wesley D. Gifford , Shawn Driscoll , Karen Lettieri , Helen M. Rowe , Dario Bonanomi , Amy Firth ,
Oded Singer3 , Didier Trono2 Samuel L. Pfaff1
Embryonic stem (ES) cells are derived from blastocyst-stage embryos and are thought to be functionally equivalent to
the inner cell mass, which lacks the ability to produce all extraembryonic tissues. Here we identify a rare transient cell
population within mouse ES and induced pluripotent stem (iPS) cell cultures that expresses high levels of transcripts
found in two-cell (2C) embryos in which the blastomeres are totipotent. We genetically tagged these 2C-like ES cells and
show that they lack the inner cell mass pluripotency proteins Oct4 (also known as Pou5f1), Sox2 and Nanog, and have
acquired the ability to contribute to both embryonic and extraembryonic tissues. We show that nearly all ES cells cycle in
and out of this privileged state, which is partially controlled by histone-modifying enzymes. Transcriptome sequencing
and bioinformatic analyses showed that many 2C transcripts are initiated from long terminal repeats derived from
endogenous retroviruses, suggesting this foreign sequence has helped to drive cell-fate regulation in placental
mammals.
The zygote and its daughter cells are totipotent because they are able to (ERVs), long interspersed nuclear element-1 (LINE-1), and the
develop into all embryonic and extraembryonic cell types1,2. The pro- non-autonomous short
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