Genome-Wide Patterns of Arabidopsis Gene Expression in Nature 英文参考文献.docVIP

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Genome-Wide Patterns of Arabidopsis Gene Expression in Nature 英文参考文献.doc

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Genome-Wide Patterns of Arabidopsis Gene Expression in Nature 英文参考文献

Genome-WidePatternsofArabidopsisGeneExpression inNature ChristinaL.Richards1,2.,UlisesRosas1.,JoshuaBanta1,3,NaehaBhambhra1,MichaelD.Purugganan1* 1DepartmentofBiologyandCenterforGenomicsandSystemsBiology,NewYorkUniversity,NewYork,NewYork,UnitedStatesofAmerica,2DepartmentofIntegrative Biology,UniversityofSouthFlorida,Tampa,Florida,UnitedStatesofAmerica,3DepartmentofBiology,UniversityofTexasatTyler,Tyler,Texas,UnitedStatesofAmerica Abstract Organismsinthewildaresubjecttomultiple,fluctuatingenvironmentalfactors,anditisincomplexnaturalenvironments thatgeneticregulatorynetworksactuallyfunctionandevolve.Weassessedgenome-widegeneexpressionpatternsinthe wildintwonaturalaccessionsofthemodelplantArabidopsisthalianaandexaminedthenatureoftranscriptionalvariation throughout its life cycle and gene expression correlations with natural environmental fluctuations. We grew plants in a naturalfieldenvironmentandmeasuredgenome-widetime-seriesgeneexpressionfromtheplantshooteverythreedays, spanningtheseedlingtoreproductivestages.Wefindthat15,352geneswereexpressedintheA.thalianashootinthefield, andaccessionandfloweringstatus(vegetativeversusflowering)werestrongcomponentsoftranscriptionalvariationinthis plant. We identified between ,110 and 190 time-varying gene expression clusters in the field, many of which were significantly overrepresented by genes regulated by abiotic and biotic environmental stresses. The two main principal componentsofvegetativeshootgeneexpression(PCveg)correlatetotemperatureandprecipitationoccurrenceinthefield. ThelargestPCveg axesincludedthermoregulatorygeneswhilethesecondmajorPCveg wasassociatedwithprecipitation andcontaineddrought-responsivegenes.ByexposingA.thalianatonaturalenvironmentsinanopenfield,weprovidea framework for further understanding the genetic networks that are deployed in natural environments, and we connect plantmoleculargeneticsinthelaboratorytoplantorganismalecologyinthewild. Citation:RichardsCL,RosasU,BantaJ,BhambhraN,PuruggananMD(2012)