On the evolving portfolio of community-standards and data sharing policies turning challenges into new opportunities 英文参考文献.docVIP

SansoneandRocca-SerraGigaScience2012,1:10 /content/1/1/10 COMMENTARY OpenAccess Ontheevolvingportfolioofcommunity-standards anddatasharingpolicies:turningchallengesinto newopportunities Susanna-AssuntaSansone*andPhilippeRocca-Serra Abstract Therearethousandsofbiologydatabaseswithhundredsofterminologies,reportingguidelines,representations models,andexchangeformatstohelpannotate,report,andsharebioscienceinvestigations.Itisevident,however, thatresearchersandbioinformaticiansstruggletonavigatethevariousstandardsandtofindtheappropriate databasetocollect,manage,andsharedata.Further,policymakers,funders,andpublisherslacksufficient informationtoformulatetheirguidelines.Inthispaper,wehighlightanumberofkeyissuesthatcanbeusedto turnthesechallengesintonewopportunities.Itistimeforallstakeholderstoworktogethertoreconcilecauseand effectandmakethedata-sharingculturefunctionalandefficient. Keywords:Standard,Ontology,Datasharing,Curation,Datapolicy,ISAcommons,ISA-Tab,BioSharing Wealthofdatasharingenablers:yetstilla challengingpractice and more than 150 reporting guidelines, representations models,andexchangeformatsthataremeanttohelpwith Shared,annotatedbioscienceresearchdataandmethods bioscience annotation, reporting, and sharing. But how offer new discovery opportunities and prevent unneces- manytimeshaveyouaskedorhavebeenaskedquestions, sary repetition of work. In the last decade, several data like: “I work with stem cells, which terminologies are preservation, management, sharing policies, and plans applicabletomydomain?”“Aretherestandardsandtools have emerged in response to increased funding for for publishing and archiving my (meta)genomics and high-throughput approaches in genomics and functional (meta)transcriptomics experiments? If not, what are the genomics science [1]. In parallel, a growing number of stepsandmethodstomobilizethecommunityanddevelop community-based groups have developed minimum these collaboratively?”, “My funding agency’s data sharing info