Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila 英文参考文献.docVIP
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Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila 英文参考文献
Open Access
Research
2009StageVolumande 10Eickbush, Issue 5, Article R49
Origin of nascent lineages and the mechanisms used to prime
second-strand DNA synthesis in the R1 and R2 retrotransposons of
Drosophila
Deborah E Stage and Thomas H Eickbush
Address: Biology Department, University of Rochester, 213 Hutchison, Rochester NY, 14627-0211, USA.
Correspondence: Thomas H Eickbush. Email: eick@
Published: 5 May 2009
Received: 27 January 2009
Revised: 27 March 2009
Accepted: 5 May 2009
Genome Biology 2009, 10:R49 (doi:10.1186/gb-2009-10-5-r49)
The electronic version of this article is the complete one and can be
found online at /2009/10/5/R49
? 2009 Stage and Eickbush; licensee BioMed Central Ltd.
This is an open access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0), which
permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
EvolutiontrpansCpoomsopnaandsr.ati/integrationvpeanalysis ooff 1R12 DandrosR2ophretrotransposonsila genomes reveals insights into the evolution and mechanism of integration of R1 and R2 retro-
Abstract
Background: Most arthropods contain R1 and R2 retrotransposons that specifically insert into
the 28S rRNA genes. Here, the sequencing reads from 12 Drosophila genomes have been used to
address two questions concerning these elements. First, to what extent is the evolution of these
elements subject to the concerted evolution process that is responsible for sequence homogeneity
among the different copies of rRNA genes? Second, how precise are the target DNA cleavages and
priming of DNA synthesis used by these elements?
Results: Most copies of R1 and R2 in each species were found to exhibit less than 0.2% sequence
divergence. However, in many species evidence was obtained for the formation of distinct
sublineages of elements, particularly in the case of R1. Analysis of the hundreds
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