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Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments 英文参考文献
QuantitativeAnalysisofGenetic
andNeuronalMulti-PerturbationExperiments
Alon Kaufman1[*,Alon Keinan2[,Isaac Meilijson3,Martin Kupiec4,Eytan Ruppin2,5*
1 Interdisciplinary Center for Neural Computation, Hebrew University, Jerusalem, Israel, 2 School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel, 3 School of
Mathematical Sciences, Tel-Aviv University, Tel-Aviv, Israel, 4 Department of Molecular Microbiology and Biotechnology, Tel-Aviv University, Tel-Aviv, Israel, 5 School of
Medicine,Tel-AvivUniversity,Tel-Aviv,Israel
Perturbationstudies,inwhichfunctionalperformanceismeasuredafterdeletion,mutation,orlesionofelementsofa
biologicalsystem,havebeentraditionallyemployedinmanyfieldsinbiology.Thevastmajorityofthesestudieshave
beenqualitativeandhaveemployedsingleperturbations,oftenresultinginlittlephenotypiceffect.Recently,newly
emerging experimental techniques have allowed researchers to carry out concomitant multi-perturbations and to
uncoverthecausalfunctionalcontributionsofsystemelements.Thisstudypresentsarigorousandquantitativemulti-
perturbation analysis of gene knockout and neuronal ablation experiments. In both cases, a quantification of the
elements’contributions,andnewinsightsandpredictions,areprovided.Multi-perturbationanalysishasapotentially
widerangeofapplicationsandisgraduallybecominganessentialtoolinbiology.
Citation:KaufmanA,KeinanA,MeilijsonI,KupiecM,RuppinE(2005)Quantitativeanalysisofgeneticandneuronalmulti-perturbationexperiments.PLoSComputBiol1(6):e64.
Toaddressthischallenge,Keinanetal.[16]developedthe
multi-perturbationShapleyvalueanalysis(MPA)method,and
Introduction
Systemidenti?cation(localizationoffunction)inbiological
networks is currently mainly studied in genetics by high-
throughput expression pro?ling and in neuroscience by
functional brain imaging. While these techniques have
proved to be very useful and productive [1,2], the correla-
tion-based approach they employ does not necessarily
identify causal relations. Previous stu
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