changes in the infrared microspectroscopic characteristics of dna caused by cationic elements, different base richness and single-stranded form红外microspectroscopic特征的变化引起的dna阳离子元素,丰富和单链形式不同的基地.pdfVIP

Changes in the Infrared Microspectroscopic Characteristics of DNA Caused by Cationic Elements, Different Base Richness and Single-Stranded Form Maria Luiza S. Mello, B. C. Vidal* ˜ Department of Structural and Physiological Biology, Institute of Biology, University of Campinas (Unicamp), Campinas, Sao Paulo, Brazil Abstract Background: The infrared (IR) analysis of dried samples of DNA and DNA-polypeptide complexes is still scarce. Here we have studied the FT-IR profiles of these components to further the understanding of the FT-IR signatures of chromatin and cell nuclei. Methodology/Principal Findings: Calf thymus and salmon testis DNA, and complexes of histone H1, protamine, poly-L- lysine and poly-L-arginine (histone-mimic macromolecules) with DNA were analyzed in an IR microspectroscope equipped with an attenuated total reflection diamond objective and Grams software. Conditions including polypeptides bound to the DNA, DNA base composition, and single-stranded form were found to differently affect the vibrational characteristics of the chemical groups (especially, PO22) in the nucleic acid. The antisymmetric stretching (nas) of the DNA PO22 was greater than the symmetric stretching (ns) of these groups and increased in the polypeptide-DNA complexes. A shift of the nas of the DNA PO22 to a lower frequency and an increased intensity of this vibration were induced especially by lysine-rich histones. Lysine richness additionally contributed to an increase in the vibrational stretching of the amide I group. Even in simple molecules such as inorganic phosphates, the vibrational characteristics of the phosphate anions were differently affected by different cations. As a result of the optimization of the DNA conformation by binding to argi