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Volume 9, Issue 9, Article R138et al.Banks2008 Open Access Software NetGrep: fast network schema searches in interactomes Eric Banks*†, Elena Nabieva*†, Ryan Peterson*‡ and Mona Singh*† Addresses: *Department of Computer Science, Princeton University, 35 Olden Street, Princeton, NJ 08540, USA. †Lewis-Sigler Institute for Integrative Genomics, Princeton University, Carl Icahn Lab, Princeton, NJ 08544, USA. ‡Current address: Department of Computer Science, Cornell University, 4130 Upson Hall, Ithaca, NY 14853, USA. Correspondence: Mona Singh. Email: msingh@ Published: 18 September 2008 Received: 11 May 2008 Revised: 22 August 2008 Genome Biology 2008, 9:R138 (doi:10.1186/gb-2008-9-9-r138) Accepted: 18 September 2008 The electronic version of this article is the complete one and can be found online at /content/9/9/R138 © 2008 Banks et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. NetGreppNetGrep is a system for searching protein interaction networks for matches to user-supplied network schemas./p Abstract NetGrep (/singhlab/netgrep/) is a system for searching protein interaction networks for matches to user-supplied network schemas. Each schema consists of descriptions of proteins (for example, their molecular functions or putative domains) along with the desired topology and types of interactions among them.