TGAC_Nov2007_GeneSet_Pathways.ppt

Gene Set Enrichment and Pathways Analysis Applications for Pathways Analysis Microarray data e.g., GenMAPP One or more QTL Pathway Types Biochemical / Metabolic Signaling and Cellular Processes Protein Interaction Receptor + ligand Phosphorylation Gene Regulation Transcription factor Gene Networks Combination of the above Boehringer Mannheim Wall Charts Metabolic Pathways Cellular and Molecular Processes Major Public Pathway Resources KEGG The Reactome Project (CSHL/EBI) NetPath (HPRD) Pathway Interaction Database (NCI/Nature) Protein Interaction Databases BioGRID MIPS MMPI BIND DIP B