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Discovery of a Non-Peptidic Inhibitor of West Nile Virus NS3 Protease by High-Throughput Docking 英文参考文献.docVIP

Discovery of a Non-Peptidic Inhibitor of West Nile Virus NS3 Protease by High-Throughput Docking 英文参考文献.doc

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Discovery of a Non-Peptidic Inhibitor of West Nile Virus NS3 Protease by High-Throughput Docking 英文参考文献

DiscoveryofaNon-PeptidicInhibitorofWestNileVirus NS3ProteasebyHigh-ThroughputDocking DariuszEkonomiuk1,Xun-ChengSu2,KiyoshiOzawa2,ChristopheBodenreider3,SiewPhengLim3, ZhengYin3,ThomasH.Keller3,DavidBeer3,ViralPatel3,GottfriedOtting2,AmedeoCaflisch1 ,Danzhi Huang1* 1DepartmentofBiochemistry,UniversityofZu¨rich,Zu¨rich,Switzerland,2ResearchSchoolofChemistry,TheAustralianNationalUniversity,Canberra,Australia,3Novartis InstituteforTropicalDiseases,Chromos,Singapore Abstract Background: The non-structural 3 protease (NS3pro) is an essential flaviviral enzyme and therefore one of the most promisingtargetsfordrugdevelopmentagainstWestNilevirus(WNV)anddengueinfections. Methodology:Inthiswork,asmall-moleculeinhibitoroftheWNVNS3prohasbeenidentifiedbyautomaticfragment-based dockingofabout12000compoundsandtestingbynuclearmagneticresonance(NMR)spectroscopyofonly22molecules. Specific binding of the inhibitor into the active site of NS3pro and its binding mode are confirmed by 15N-HSQC NMR spectra.Theinhibitoryactivityisfurthervalidatedbyanenzymaticassayandatryptophanfluorescencequenchingassay. Conclusion: The inhibitor [4-(carbamimidoylsulfanylmethyl)-2,5-dimethylphenyl]-methylsulfanylmethanimidamide has a goodratioofbindingaffinityversusmolecularweight(ligandefficiencyof0.33kcal/molpernon-hydrogenatom),andthus hasgoodpotentialasleadcompoundforfurtherdevelopmenttocombatWestNilevirusinfections. Citation:EkonomiukD,SuX-C,OzawaK,BodenreiderC,LimSP,etal.(2009)DiscoveryofaNon-PeptidicInhibitorofWestNileVirusNS3ProteasebyHigh- ThroughputDocking.PLoSNeglTropDis3(1):e356.doi:10.1371/journal.pntd.0000356 Editor:DianeJoseph-McCarthy,WyethResearch,UnitedStatesofAmerica ReceivedSeptember11,2008;AcceptedDecember14,2008;PublishedJanuary13,2009 Copyright: ?2009Ekonomiuketal.Thisisanopen-accessarticledistributedunderthetermsoftheCreativeCommonsAttributionLicense,whichpermits unrestricteduse,distribution,andreproductioninanymedium,providedtheoriginalauthorandsourcearecredited. Funding:Theautho

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