Efficient Reverse-Engineering of a Developmental Gene Regulatory Network 英文参考文献.docVIP

下载本文档

2
0
约 21页
2017-05-11 发布于上海
举报
版权申诉

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network 英文参考文献.doc

1、本文档共21页，可阅读全部内容。
2、原创力文档（book118）网站文档一经付费（服务费），不意味着购买了该文档的版权，仅供个人/单位学习、研究之用，不得用于商业用途，未经授权，严禁复制、发行、汇编、翻译或者网络传播等，侵权必究。
3、本站所有内容均由合作方或网友上传，本站不对文档的完整性、权威性及其观点立场正确性做任何保证或承诺！文档内容仅供研究参考，付费前请自行鉴别。如您付费，意味着您自己接受本站规则且自行承担风险，本站不退款、不进行额外附加服务；查看《如何避免下载的几个坑》。如果您已付费下载过本站文档，您可以点击这里二次下载。
4、如文档侵犯商业秘密、侵犯著作权、侵犯人身权等，请点击“版权申诉”（推荐），也可以打举报电话：400-050-0827(电话支持时间：9:00-18:30)。
5、该文档为VIP文档，如果想要下载，成为VIP会员后，下载免费。
6、成为VIP后，下载本文档将扣除1次下载权益。下载后，不支持退款、换文档。如有疑问请联系我们。
7、成为VIP后，您将拥有八大权益，权益包括：VIP文档下载权益、阅读免打扰、文档格式转换、高级专利检索、专属身份标志、高级客服、多端互通、版权登记。
8、VIP文档为合作方或网友上传，每下载1次，网站将根据用户上传文档的质量评分、类型等，对文档贡献者给予高额补贴、流量扶持。如果你也想贡献VIP文档。上传文档

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network 英文参考文献

EfficientReverse-EngineeringofaDevelopmentalGene RegulatoryNetwork AntonCrombach1.,KarlR.Wotton1.,DamjanCicin-Sain1,MaksatAshyraliyev2,JohannesJaeger1* 1EMBL/CRGResearchUnitinSystemsBiology,CentreforGenomicRegulation(CRG)andUniversitatPompeuFabra(UPF),Barcelona,Spain,2DepartmentofMathematics andComputerSciences,Bahc?es?ehir University,Istanbul,Turkey Abstract Understanding the complex regulatory networks underlying development and evolution of multi-cellular organisms is a majorprobleminbiology.Computationalmodelscanbeusedastoolstoextracttheregulatorystructureanddynamicsof suchnetworksfromgeneexpressiondata.Thisapproachiscalledreverseengineering.Ithasbeensuccessfullyappliedto many gene networks in various biological systems. However, to reconstitute the structure and non-linear dynamics of a developmentalgenenetworkinitsspatialcontextremainsaconsiderablechallenge.Here,weaddressthischallengeusing a case study: the gap gene network involved in segment determination during early development of Drosophila melanogaster. A major problem for reverse-engineering pattern-forming networks is the significant amount of time and effort required to acquire and quantify spatial gene expression data. We have developed a simplified data processing pipelinethatconsiderablyincreasesthethroughputofthemethod,butresultsindataofreducedaccuracycomparedto thosepreviously used for gapgene network inference. Wedemonstrate that wecaninfer the correct networkstructure usingourreduceddataset,andinvestigateminimaldatarequirementsforsuccessfulreverseengineering.Ourresultsshow that timing and position of expression domain boundaries are the crucial features for determining regulatory network structurefromdata,whileitislessimportanttopreciselymeasureexpressionlevels.Basedonthis,wedefineminimaldata requirements for gap gene network inference. Our results demonstrate the feasibility of reverse-engineering with much reduced experimental effort. This enables more widespread use of the method in differ