Evolution of the B3 DNA Binding Superfamily New Insights into REM Family Gene Diversification 英文参考文献.docVIP
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Evolution of the B3 DNA Binding Superfamily New Insights into REM Family Gene Diversification 英文参考文献
EvolutionoftheB3DNABindingSuperfamily:New
InsightsintoREMFamilyGeneDiversification
ElissonA.C.Romanel1,CarlosG.Schrago1,RafaelM.Coun?ago2,ClaudiaA.M.Russo1,
Ma′rcioAlves-Ferreira1*
1DepartmentofGenetics,FederalUniversityofRiodeJaneiro,RiodeJaneiro,Brazil,2DepartmentofBiochemistry,UniversityofOtago,Dunedin,NewZealand
Abstract
Background: The B3 DNA binding domain includes five families: auxin response factor (ARF), abscisic acid-insensitive3
(ABI3), high level expression of sugar inducible (HSI), related to ABI3/VP1 (RAV) and reproductive meristem (REM). The
releaseofthecompletegenomesoftheangiospermeudicotsArabidopsisthalianaandPopulustrichocarpa,themonocot
Orysasativa,thebryophytePhyscomitrellapatens,thegreenalgaeChlamydomonasreinhardtiiandVolvoxcarteriandthered
algaeCyanidioschyzonmeloraeprovidedanexceptionalopportunitytostudytheevolutionofthissuperfamily.
Methodology: In order to better understand the origin and the diversification of B3 domains in plants, we combined
comparative phylogenetic analysis with exon/intron structure and duplication events. In addition, we investigated the
conservationanddivergenceoftheB3domainduringtheoriginandevolutionofeachfamily.
Conclusions:OurdataindicatethatshowedthattheB3containinggeneshaveundergoneextensiveduplicationevents,
andthattheREMfamilyB3domainhasahighlydivergedDNAbinding.Ourresultsalsoindicatethatthefoundingmember
oftheB3genefamilyislikelytobesimilartotheABI3/HSIgenesfoundinC.reinhardtiiandV.carteri.AmongtheB3families,
ABI3,HSI,RAVandARFaremoststructurallyconserved,whereastheREMfamilyhasexperiencedarapiddivergence.These
resultsarediscussedinlightoftheirfunctionalandevolutionaryrolesinplantdevelopment.
Citation:RomanelEAC,SchragoCG,Coun?agoRM,RussoCAM,Alves-FerreiraM(2009)EvolutionoftheB3DNABindingSuperfamily:NewInsightsintoREM
FamilyGeneDiversification.PLoSONE4(6):e5791.doi:10.1371/journal.pone.0005791
Editor:Pa¨r K.Ingvarsson,UniversityofUmea?, Sweden
ReceivedDecember29,2008;AcceptedApril14,2009;PublishedJune8,2009
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