Rhythmic Diel Pattern of Gene Expression in Juvenile Maize Leaf 英文参考文献.docVIP

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Rhythmic Diel Pattern of Gene Expression in Juvenile Maize Leaf 英文参考文献.doc

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Rhythmic Diel Pattern of Gene Expression in Juvenile Maize Leaf 英文参考文献

RhythmicDielPatternofGeneExpressioninJuvenile MaizeLeaf MaciejJon′czyk1,AlicjaSobkowiak2,Pawe?Siedlecki3,Przemys?awBiecek4,JoannaTrzcinska- Danielewicz5,JerzyTiuryn6,JanFronk5,Pawe?Sowin′ski1,2* 1Department ofPlantMolecularEcophysiology,InstituteofPlantExperimentalBiologyandBiotechnology,FacultyofBiology,UniversityofWarsaw, Warsaw,Poland, 2Plant Biochemistry and Physiology Department, Plant Breeding and Acclimatization Institute - National Research Institute, Radziko′w,Poland, 3Department of Plant Molecular Biology, Institute of Plant Experimental Biology and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland, 4Institute of Applied MathematicsandMechanics,FacultyofMathematics,Informatics,andMechanics,UniversityofWarsaw,Warsaw,Poland,5DepartmentofMolecularBiology,Instituteof Biochemistry, Faculty of Biology, University of Warsaw, Warsaw, Poland, 6Institute of Informatics, Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw,Warsaw,Poland Abstract Background:Numerousbiochemicalandphysiologicalparametersoflivingorganismsfollowacircadianrhythm.Although suchrhythmicbehaviorisparticularlypronouncedinplants,whicharestrictlydependentonthedailyphotoperiod,dataon themolecularaspectsofthediurnalcycleinplantsisscarceandmostlyconcernsthemodelspeciesArabidopsisthaliana. Herewestudiedtheleaftranscriptomeinseedlingsofmaize,animportantC4croponlydistantlyrelatedto A.thaliana, throughoutacycleof10hdarknessand14hlighttolookforrhythmicpatternsofgeneexpression. Results:UsingDNAmicroarrayscomprisingca.43,000maize-specificprobeswefoundthatca.12%ofallgenesshowed clear-cut diel rhythms of expression. Cluster analysis identified 35 groups containing from four to ca. 1,000 genes, each comprising genes of similar expression patterns. Perhaps unexpectedly, the most pronounced and most common (concerningthehighestnumberofgenes)expressionmaximawereobservedtowardsandduringthedarkphase.Using Gene Ontology classification several meaningful fu