viral diversity and diversification of major non-structural genes vif, vpr, vpu, tat exon 1 and rev exon 1 during primary hiv-1 subtype c infection病毒主要非结构性基因vif的多样性和多元化,冲程体积,vpu,答外显子1和转速外显子1在主要hiv - 1 c亚型的感染.pdfVIP
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viral diversity and diversification of major non-structural genes vif, vpr, vpu, tat exon 1 and rev exon 1 during primary hiv-1 subtype c infection病毒主要非结构性基因vif的多样性和多元化,冲程体积,vpu,答外显子1和转速外显子1在主要hiv - 1 c亚型的感染
Viral Diversity and Diversification of Major Non-
Structural Genes vif, vpr, vpu, tat exon 1 and rev exon 1
during Primary HIV-1 Subtype C Infection
1,2,3 2,3 1 2,3
Raabya Rossenkhan , Vladimir Novitsky , Theresa K. Sebunya , Rosemary Musonda ,
Berhanu A. Gashe1, M. Essex2,3*
1 Department of Biological Sciences, University of Botswana, Gaborone, Botswana, 2 Botswana–Harvard AIDS Institute, Gaborone, Botswana, 3 Department of
Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America
Abstract
To assess the level of intra-patient diversity and evolution of HIV-1C non-structural genes in primary infection, viral
quasispecies obtained by single genome amplification (SGA) at multiple sampling timepoints up to 500 days post-
seroconversion (p/s) were analyzed. The mean intra-patient diversity was 0.11% (95% CI; 0.02 to 0.20) for vif, 0.23% (95% CI;
0.08 to 0.38) for vpr, 0.35% (95% CI; 20.05 to 0.75) for vpu, 0.18% (95% CI; 0.01 to 0.35) for tat exon 1 and 0.30% (95% CI; 0.02
to 0.58) for rev exon 1 during the time period 0 to 90 days p/s. The intra-patient diversity increased gradually in all non-
structural genes over the first year of HIV-1 infection, which was evident from the vif mean intra-patient diversity of 0.46%
(95% CI; 0.28 to 0.64), vpr 0.44% (95% CI; 0.24 to 0.64), vpu 0.84% (95% CI; 0.55 to 1.13), tat exon 1 0.35% (95% CI; 0.14 to
0.56 ) and rev exon 1 0.42% (95% CI; 0.18 to 0.66) during the time period of 181 to 500 days p/s. There was a statistically
significant increase in viral diversity for vif (p = 0.013) and vpu (p = 0.002). No associations between
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